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eLab posistemės integracijos dokumentacija - Local Development build (v0.3.3) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Profilis: LtSpecimen

Official URL: http://esveikata.lt/fhir/StructureDefinition/lt-specimen Version: 0.3.3
Active as of 2023-02-09 Computable Name: LtSpecimen

Ėminys / Specimen

Usage:

Profilio turinio peržiūra

Description of Profiles, Differentials, Snapshots and how the different presentations work.

This structure is derived from Specimen

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen Specimen
... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
.... performer S 1..1 Reference(LtOrganization) Įstaiga, kuri tirs paimtą ėminį / Organization which has to perform the procedures on the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-performer
... Slices for identifier 0..* Identifier External Identifier
Slice: Unordered, Open by value:system
.... identifier:All Slices Content/Rules for all slices
..... value 1..1 string The value that is unique
.... identifier:RegistrationCode S 1..1 Identifier Ėminio regisracijos kodas / Specimen registration code
..... system 0..1 uri The namespace for the identifier value
Required Pattern: http://esveikata.lt/classifiers/Specimen/RegistrationCode
... status S 1..1 code Statusas / Status
.... Slices for coding 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:system
..... coding:LMB S 1..1 Coding Code defined by a terminology system
...... system 1..1 uri Identity of the terminology system
Required Pattern: https://www.medicinosnk.lt/processed-specimen
...... code 1..1 code Symbol in syntax defined by the system
... subject S 1..1 Reference(LtPatient) Pacientas, iš kurio paimtas ėminys / Patient from which the specimen came from
... receivedTime S 0..1 dateTime Ėminio gavimo laboratorijoje laikas / The time when specimen is received by the testing laboratory
... request S 1..* Reference(LtServiceRequest) Tyrimai, dėl kurių buvo paimtas ėminys / Why the specimen was collected
... collection S 1..1 BackboneElement Paimto ėminio informacija / Collection details
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... bodyPosition S 1..1 (Complex) Kūno padėtis ėminio ėmimo metu / Body position during the extraction
URL: http://hl7.org/fhir/StructureDefinition/observation-bodyPosition
...... valueCodeableConcept
....... coding
​........ system 1.. Required Pattern: https://www.medicinosnk.lt/processed-specimen
​........ code 1..
..... receivedBy S 0..1 Reference(LtPractitionerRole) Ėminį priėmęs specialistas / Whoever has received the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-receivedBy
.... collector S 1..1 Reference(LtPractitionerRole) Ėminį paėmęs specialistas / Who collected the specimen
.... collected[x] S 1..1 dateTime Ėminio paėmimo laikas / Collection time
.... quantity S 1..1 SimpleQuantity Ėminio kiekis / The quantity of specimen collected
.... bodySite
..... concept
...... text S 0..1 string Ėminio kilmės anatominė vieta / Body site from which the specimen collection was collected
... note S 0..* Annotation Pastabos / Comments

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..* Specimen Sample for analysis
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... contained 0..* Resource Contained, inline Resources
... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
.... performer S 1..1 Reference(LtOrganization) Įstaiga, kuri tirs paimtą ėminį / Organization which has to perform the procedures on the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-performer
... Slices for identifier Σ 0..* Identifier External Identifier
Slice: Unordered, Open by value:system
.... identifier:All Slices Content/Rules for all slices
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... value ΣC 1..1 string The value that is unique
Example General: 123456
.... identifier:RegistrationCode SΣ 1..1 Identifier Ėminio regisracijos kodas / Specimen registration code
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... system Σ 0..1 uri The namespace for the identifier value
Required Pattern: http://esveikata.lt/classifiers/Specimen/RegistrationCode
... status ?!SΣ 1..1 code Statusas / Status
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.

... type SΣ 1..1 CodeableConcept Ėminio tipas / Kind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:system
..... coding:LMB SΣ 1..1 Coding Code defined by a terminology system
...... system Σ 1..1 uri Identity of the terminology system
Required Pattern: https://www.medicinosnk.lt/processed-specimen
...... code ΣC 1..1 code Symbol in syntax defined by the system
... subject SΣ 1..1 Reference(LtPatient) Pacientas, iš kurio paimtas ėminys / Patient from which the specimen came from
... receivedTime SΣ 0..1 dateTime Ėminio gavimo laboratorijoje laikas / The time when specimen is received by the testing laboratory
... request S 1..* Reference(LtServiceRequest) Tyrimai, dėl kurių buvo paimtas ėminys / Why the specimen was collected
... collection S 1..1 BackboneElement Paimto ėminio informacija / Collection details
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... bodyPosition S 1..1 (Complex) Kūno padėtis ėminio ėmimo metu / Body position during the extraction
URL: http://hl7.org/fhir/StructureDefinition/observation-bodyPosition
...... extension 0..0
...... url 1..1 uri "http://hl7.org/fhir/StructureDefinition/observation-bodyPosition"
...... value[x] 1..1 CodeableConcept Value of extension
..... receivedBy S 0..1 Reference(LtPractitionerRole) Ėminį priėmęs specialistas / Whoever has received the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-receivedBy
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector SΣ 1..1 Reference(LtPractitionerRole) Ėminį paėmęs specialistas / Who collected the specimen
.... collected[x] SΣ 1..1 dateTime Ėminio paėmimo laikas / Collection time
.... quantity S 1..1 SimpleQuantity Ėminio kiekis / The quantity of specimen collected
.... bodySite 0..1 CodeableReference(BodyStructure) Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts

..... concept Σ 0..1 CodeableConcept Reference to a concept (by class)
...... text SΣ 0..1 string Ėminio kilmės anatominė vieta / Body site from which the specimen collection was collected
... note S 0..* Annotation Pastabos / Comments

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
Specimen.identifier.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.identifier:RegistrationCode.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.statusrequiredSpecimenStatus
http://hl7.org/fhir/ValueSet/specimen-status|5.0.0
from the FHIR Standard
Specimen.typeexampleHl7VSSpecimenType
http://terminology.hl7.org/ValueSet/v2-0487
Specimen.collection.bodySiteexampleSNOMEDCTBodyStructures
http://hl7.org/fhir/ValueSet/body-site
from the FHIR Standard

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()
NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..* Specimen Sample for analysis
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
... contained 0..* Resource Contained, inline Resources
... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
.... performer S 1..1 Reference(LtOrganization) Įstaiga, kuri tirs paimtą ėminį / Organization which has to perform the procedures on the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-performer
... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored
... Slices for identifier Σ 0..* Identifier External Identifier
Slice: Unordered, Open by value:system
.... identifier:All Slices Content/Rules for all slices
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... type Σ 0..1 CodeableConcept Description of identifier
Binding: IdentifierTypeCodes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

..... system Σ 0..1 uri The namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
..... value ΣC 1..1 string The value that is unique
Example General: 123456
..... period Σ 0..1 Period Time period when id is/was valid for use
..... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
.... identifier:RegistrationCode SΣ 1..1 Identifier Ėminio regisracijos kodas / Specimen registration code
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... type Σ 0..1 CodeableConcept Description of identifier
Binding: IdentifierTypeCodes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

..... system Σ 0..1 uri The namespace for the identifier value
Required Pattern: http://esveikata.lt/classifiers/Specimen/RegistrationCode
..... value ΣC 0..1 string The value that is unique
Example General: 123456
..... period Σ 0..1 Period Time period when id is/was valid for use
..... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
... accessionIdentifier Σ 0..1 Identifier Identifier assigned by the lab
... status ?!SΣ 1..1 code Statusas / Status
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.

... type SΣ 1..1 CodeableConcept Ėminio tipas / Kind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

.... id 0..1 id Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:system
..... coding:LMB SΣ 1..1 Coding Code defined by a terminology system
...... id 0..1 id Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system Σ 1..1 uri Identity of the terminology system
Required Pattern: https://www.medicinosnk.lt/processed-specimen
...... version Σ 0..1 string Version of the system - if relevant
...... code ΣC 1..1 code Symbol in syntax defined by the system
...... display ΣC 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
... subject SΣ 1..1 Reference(LtPatient) Pacientas, iš kurio paimtas ėminys / Patient from which the specimen came from
... receivedTime SΣ 0..1 dateTime Ėminio gavimo laboratorijoje laikas / The time when specimen is received by the testing laboratory
... parent 0..* Reference(Specimen) Specimen from which this specimen originated
... request S 1..* Reference(LtServiceRequest) Tyrimai, dėl kurių buvo paimtas ėminys / Why the specimen was collected
... combined Σ 0..1 code grouped | pooled
Binding: SpecimenCombined (required): Codes for the combined status of a specimen.

... role 0..* CodeableConcept The role the specimen serves
Binding: SpecimenRole (preferred): Codes describing specimen role.


... feature 0..* BackboneElement The physical feature of a specimen
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... type 1..1 CodeableConcept Highlighted feature
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts

.... description 1..1 string Information about the feature
... collection S 1..1 BackboneElement Paimto ėminio informacija / Collection details
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... bodyPosition S 1..1 (Complex) Kūno padėtis ėminio ėmimo metu / Body position during the extraction
URL: http://hl7.org/fhir/StructureDefinition/observation-bodyPosition
...... id 0..1 id Unique id for inter-element referencing
...... extension 0..0
...... url 1..1 uri "http://hl7.org/fhir/StructureDefinition/observation-bodyPosition"
...... value[x] 1..1 CodeableConcept Value of extension
....... id 0..1 id Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... coding Σ 0..* Coding Code defined by a terminology system
....... text Σ 0..1 string Plain text representation of the concept
..... receivedBy S 0..1 Reference(LtPractitionerRole) Ėminį priėmęs specialistas / Whoever has received the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-receivedBy
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector SΣ 1..1 Reference(LtPractitionerRole) Ėminį paėmęs specialistas / Who collected the specimen
.... collected[x] SΣ 1..1 dateTime Ėminio paėmimo laikas / Collection time
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity S 1..1 SimpleQuantity Ėminio kiekis / The quantity of specimen collected
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.

.... device 0..1 CodeableReference(Device) Device used to perform collection
Binding Description (No ValueSet): (example): The device that was used to obtain the specimen (e.g. a catheter or catheter part used to draw the blood via a central line).

.... procedure 0..1 Reference(Procedure) The procedure that collects the specimen
.... bodySite 0..1 CodeableReference(BodyStructure) Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts

..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... concept Σ 0..1 CodeableConcept Reference to a concept (by class)
...... id 0..1 id Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding Σ 0..* Coding Code defined by a terminology system
...... text SΣ 0..1 string Ėminio kilmės anatominė vieta / Body site from which the specimen collection was collected
..... reference Σ 0..1 Reference() Reference to a resource (by instance)
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.

..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... description 0..1 string Textual description of procedure
.... method 0..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen.

.... additive 0..* Reference(Substance) Material used in the processing step
.... time[x] 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... device 1..1 Reference(Device) Device resource for the container
.... location 0..1 Reference(Location) Where the container is
.... specimenQuantity 0..1 SimpleQuantity Quantity of specimen within container
... condition Σ 0..* CodeableConcept State of the specimen
Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.


... note S 0..* Annotation Pastabos / Comments

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
Specimen.languagerequiredAllLanguages
http://hl7.org/fhir/ValueSet/all-languages|5.0.0
from the FHIR Standard
Specimen.identifier.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.identifier.typeextensibleIdentifierTypeCodes
http://hl7.org/fhir/ValueSet/identifier-type
from the FHIR Standard
Specimen.identifier:RegistrationCode.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.identifier:RegistrationCode.typeextensibleIdentifierTypeCodes
http://hl7.org/fhir/ValueSet/identifier-type
from the FHIR Standard
Specimen.statusrequiredSpecimenStatus
http://hl7.org/fhir/ValueSet/specimen-status|5.0.0
from the FHIR Standard
Specimen.typeexampleHl7VSSpecimenType
http://terminology.hl7.org/ValueSet/v2-0487
Specimen.combinedrequiredSpecimenCombined
http://hl7.org/fhir/ValueSet/specimen-combined|5.0.0
from the FHIR Standard
Specimen.rolepreferredSpecimenRole
http://hl7.org/fhir/ValueSet/specimen-role
from the FHIR Standard
Specimen.feature.typeexampleSNOMEDCTBodyStructures
http://hl7.org/fhir/ValueSet/body-site
from the FHIR Standard
Specimen.collection.methodexampleFHIRSpecimenCollectionMethod
http://hl7.org/fhir/ValueSet/specimen-collection-method
from the FHIR Standard
Specimen.collection.deviceexample
Specimen.collection.bodySiteexampleSNOMEDCTBodyStructures
http://hl7.org/fhir/ValueSet/body-site
from the FHIR Standard
Specimen.collection.fastingStatus[x]extensibleHl7VSRelevantClincialInformation
http://terminology.hl7.org/ValueSet/v2-0916
Specimen.processing.methodexampleSpecimenProcessingMethod
http://hl7.org/fhir/ValueSet/specimen-processing-method
from the FHIR Standard
Specimen.conditionextensibleHl7VSSpecimenCondition
http://terminology.hl7.org/ValueSet/v2-0493

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

This structure is derived from Specimen

Summary

Mandatory: 17 elements(3 nested mandatory elements)
Must-Support: 16 elements

Structures

This structure refers to these other structures:

Extensions

This structure refers to these extensions:

Slices

This structure defines the following Slices:

  • The element 1 is sliced based on the value of Specimen.identifier
  • The element 1 is sliced based on the value of Specimen.type.coding

Differential View

This structure is derived from Specimen

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen Specimen
... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
.... performer S 1..1 Reference(LtOrganization) Įstaiga, kuri tirs paimtą ėminį / Organization which has to perform the procedures on the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-performer
... Slices for identifier 0..* Identifier External Identifier
Slice: Unordered, Open by value:system
.... identifier:All Slices Content/Rules for all slices
..... value 1..1 string The value that is unique
.... identifier:RegistrationCode S 1..1 Identifier Ėminio regisracijos kodas / Specimen registration code
..... system 0..1 uri The namespace for the identifier value
Required Pattern: http://esveikata.lt/classifiers/Specimen/RegistrationCode
... status S 1..1 code Statusas / Status
.... Slices for coding 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:system
..... coding:LMB S 1..1 Coding Code defined by a terminology system
...... system 1..1 uri Identity of the terminology system
Required Pattern: https://www.medicinosnk.lt/processed-specimen
...... code 1..1 code Symbol in syntax defined by the system
... subject S 1..1 Reference(LtPatient) Pacientas, iš kurio paimtas ėminys / Patient from which the specimen came from
... receivedTime S 0..1 dateTime Ėminio gavimo laboratorijoje laikas / The time when specimen is received by the testing laboratory
... request S 1..* Reference(LtServiceRequest) Tyrimai, dėl kurių buvo paimtas ėminys / Why the specimen was collected
... collection S 1..1 BackboneElement Paimto ėminio informacija / Collection details
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... bodyPosition S 1..1 (Complex) Kūno padėtis ėminio ėmimo metu / Body position during the extraction
URL: http://hl7.org/fhir/StructureDefinition/observation-bodyPosition
...... valueCodeableConcept
....... coding
​........ system 1.. Required Pattern: https://www.medicinosnk.lt/processed-specimen
​........ code 1..
..... receivedBy S 0..1 Reference(LtPractitionerRole) Ėminį priėmęs specialistas / Whoever has received the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-receivedBy
.... collector S 1..1 Reference(LtPractitionerRole) Ėminį paėmęs specialistas / Who collected the specimen
.... collected[x] S 1..1 dateTime Ėminio paėmimo laikas / Collection time
.... quantity S 1..1 SimpleQuantity Ėminio kiekis / The quantity of specimen collected
.... bodySite
..... concept
...... text S 0..1 string Ėminio kilmės anatominė vieta / Body site from which the specimen collection was collected
... note S 0..* Annotation Pastabos / Comments

doco Documentation for this format

Key Elements View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..* Specimen Sample for analysis
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... contained 0..* Resource Contained, inline Resources
... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
.... performer S 1..1 Reference(LtOrganization) Įstaiga, kuri tirs paimtą ėminį / Organization which has to perform the procedures on the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-performer
... Slices for identifier Σ 0..* Identifier External Identifier
Slice: Unordered, Open by value:system
.... identifier:All Slices Content/Rules for all slices
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... value ΣC 1..1 string The value that is unique
Example General: 123456
.... identifier:RegistrationCode SΣ 1..1 Identifier Ėminio regisracijos kodas / Specimen registration code
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... system Σ 0..1 uri The namespace for the identifier value
Required Pattern: http://esveikata.lt/classifiers/Specimen/RegistrationCode
... status ?!SΣ 1..1 code Statusas / Status
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.

... type SΣ 1..1 CodeableConcept Ėminio tipas / Kind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:system
..... coding:LMB SΣ 1..1 Coding Code defined by a terminology system
...... system Σ 1..1 uri Identity of the terminology system
Required Pattern: https://www.medicinosnk.lt/processed-specimen
...... code ΣC 1..1 code Symbol in syntax defined by the system
... subject SΣ 1..1 Reference(LtPatient) Pacientas, iš kurio paimtas ėminys / Patient from which the specimen came from
... receivedTime SΣ 0..1 dateTime Ėminio gavimo laboratorijoje laikas / The time when specimen is received by the testing laboratory
... request S 1..* Reference(LtServiceRequest) Tyrimai, dėl kurių buvo paimtas ėminys / Why the specimen was collected
... collection S 1..1 BackboneElement Paimto ėminio informacija / Collection details
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... bodyPosition S 1..1 (Complex) Kūno padėtis ėminio ėmimo metu / Body position during the extraction
URL: http://hl7.org/fhir/StructureDefinition/observation-bodyPosition
...... extension 0..0
...... url 1..1 uri "http://hl7.org/fhir/StructureDefinition/observation-bodyPosition"
...... value[x] 1..1 CodeableConcept Value of extension
..... receivedBy S 0..1 Reference(LtPractitionerRole) Ėminį priėmęs specialistas / Whoever has received the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-receivedBy
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector SΣ 1..1 Reference(LtPractitionerRole) Ėminį paėmęs specialistas / Who collected the specimen
.... collected[x] SΣ 1..1 dateTime Ėminio paėmimo laikas / Collection time
.... quantity S 1..1 SimpleQuantity Ėminio kiekis / The quantity of specimen collected
.... bodySite 0..1 CodeableReference(BodyStructure) Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts

..... concept Σ 0..1 CodeableConcept Reference to a concept (by class)
...... text SΣ 0..1 string Ėminio kilmės anatominė vieta / Body site from which the specimen collection was collected
... note S 0..* Annotation Pastabos / Comments

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
Specimen.identifier.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.identifier:RegistrationCode.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.statusrequiredSpecimenStatus
http://hl7.org/fhir/ValueSet/specimen-status|5.0.0
from the FHIR Standard
Specimen.typeexampleHl7VSSpecimenType
http://terminology.hl7.org/ValueSet/v2-0487
Specimen.collection.bodySiteexampleSNOMEDCTBodyStructures
http://hl7.org/fhir/ValueSet/body-site
from the FHIR Standard

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Specimen 0..* Specimen Sample for analysis
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
... contained 0..* Resource Contained, inline Resources
... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
.... performer S 1..1 Reference(LtOrganization) Įstaiga, kuri tirs paimtą ėminį / Organization which has to perform the procedures on the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-performer
... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored
... Slices for identifier Σ 0..* Identifier External Identifier
Slice: Unordered, Open by value:system
.... identifier:All Slices Content/Rules for all slices
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... type Σ 0..1 CodeableConcept Description of identifier
Binding: IdentifierTypeCodes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

..... system Σ 0..1 uri The namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
..... value ΣC 1..1 string The value that is unique
Example General: 123456
..... period Σ 0..1 Period Time period when id is/was valid for use
..... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
.... identifier:RegistrationCode SΣ 1..1 Identifier Ėminio regisracijos kodas / Specimen registration code
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .

..... type Σ 0..1 CodeableConcept Description of identifier
Binding: IdentifierTypeCodes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.

..... system Σ 0..1 uri The namespace for the identifier value
Required Pattern: http://esveikata.lt/classifiers/Specimen/RegistrationCode
..... value ΣC 0..1 string The value that is unique
Example General: 123456
..... period Σ 0..1 Period Time period when id is/was valid for use
..... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
... accessionIdentifier Σ 0..1 Identifier Identifier assigned by the lab
... status ?!SΣ 1..1 code Statusas / Status
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.

... type SΣ 1..1 CodeableConcept Ėminio tipas / Kind of material that forms the specimen
Binding: hl7VS-specimenType (example): The type of the specimen.

.... id 0..1 id Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:system
..... coding:LMB SΣ 1..1 Coding Code defined by a terminology system
...... id 0..1 id Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system Σ 1..1 uri Identity of the terminology system
Required Pattern: https://www.medicinosnk.lt/processed-specimen
...... version Σ 0..1 string Version of the system - if relevant
...... code ΣC 1..1 code Symbol in syntax defined by the system
...... display ΣC 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
... subject SΣ 1..1 Reference(LtPatient) Pacientas, iš kurio paimtas ėminys / Patient from which the specimen came from
... receivedTime SΣ 0..1 dateTime Ėminio gavimo laboratorijoje laikas / The time when specimen is received by the testing laboratory
... parent 0..* Reference(Specimen) Specimen from which this specimen originated
... request S 1..* Reference(LtServiceRequest) Tyrimai, dėl kurių buvo paimtas ėminys / Why the specimen was collected
... combined Σ 0..1 code grouped | pooled
Binding: SpecimenCombined (required): Codes for the combined status of a specimen.

... role 0..* CodeableConcept The role the specimen serves
Binding: SpecimenRole (preferred): Codes describing specimen role.


... feature 0..* BackboneElement The physical feature of a specimen
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... type 1..1 CodeableConcept Highlighted feature
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts

.... description 1..1 string Information about the feature
... collection S 1..1 BackboneElement Paimto ėminio informacija / Collection details
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... bodyPosition S 1..1 (Complex) Kūno padėtis ėminio ėmimo metu / Body position during the extraction
URL: http://hl7.org/fhir/StructureDefinition/observation-bodyPosition
...... id 0..1 id Unique id for inter-element referencing
...... extension 0..0
...... url 1..1 uri "http://hl7.org/fhir/StructureDefinition/observation-bodyPosition"
...... value[x] 1..1 CodeableConcept Value of extension
....... id 0..1 id Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... coding Σ 0..* Coding Code defined by a terminology system
....... text Σ 0..1 string Plain text representation of the concept
..... receivedBy S 0..1 Reference(LtPractitionerRole) Ėminį priėmęs specialistas / Whoever has received the specimen
URL: http://esveikata.lt/fhir/StructureDefinition/specimen-receivedBy
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector SΣ 1..1 Reference(LtPractitionerRole) Ėminį paėmęs specialistas / Who collected the specimen
.... collected[x] SΣ 1..1 dateTime Ėminio paėmimo laikas / Collection time
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity S 1..1 SimpleQuantity Ėminio kiekis / The quantity of specimen collected
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.

.... device 0..1 CodeableReference(Device) Device used to perform collection
Binding Description (No ValueSet): (example): The device that was used to obtain the specimen (e.g. a catheter or catheter part used to draw the blood via a central line).

.... procedure 0..1 Reference(Procedure) The procedure that collects the specimen
.... bodySite 0..1 CodeableReference(BodyStructure) Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts

..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... concept Σ 0..1 CodeableConcept Reference to a concept (by class)
...... id 0..1 id Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding Σ 0..* Coding Code defined by a terminology system
...... text SΣ 0..1 string Ėminio kilmės anatominė vieta / Body site from which the specimen collection was collected
..... reference Σ 0..1 Reference() Reference to a resource (by instance)
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.

..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... description 0..1 string Textual description of procedure
.... method 0..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen.

.... additive 0..* Reference(Substance) Material used in the processing step
.... time[x] 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... device 1..1 Reference(Device) Device resource for the container
.... location 0..1 Reference(Location) Where the container is
.... specimenQuantity 0..1 SimpleQuantity Quantity of specimen within container
... condition Σ 0..* CodeableConcept State of the specimen
Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.


... note S 0..* Annotation Pastabos / Comments

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
Specimen.languagerequiredAllLanguages
http://hl7.org/fhir/ValueSet/all-languages|5.0.0
from the FHIR Standard
Specimen.identifier.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.identifier.typeextensibleIdentifierTypeCodes
http://hl7.org/fhir/ValueSet/identifier-type
from the FHIR Standard
Specimen.identifier:RegistrationCode.userequiredIdentifierUse
http://hl7.org/fhir/ValueSet/identifier-use|5.0.0
from the FHIR Standard
Specimen.identifier:RegistrationCode.typeextensibleIdentifierTypeCodes
http://hl7.org/fhir/ValueSet/identifier-type
from the FHIR Standard
Specimen.statusrequiredSpecimenStatus
http://hl7.org/fhir/ValueSet/specimen-status|5.0.0
from the FHIR Standard
Specimen.typeexampleHl7VSSpecimenType
http://terminology.hl7.org/ValueSet/v2-0487
Specimen.combinedrequiredSpecimenCombined
http://hl7.org/fhir/ValueSet/specimen-combined|5.0.0
from the FHIR Standard
Specimen.rolepreferredSpecimenRole
http://hl7.org/fhir/ValueSet/specimen-role
from the FHIR Standard
Specimen.feature.typeexampleSNOMEDCTBodyStructures
http://hl7.org/fhir/ValueSet/body-site
from the FHIR Standard
Specimen.collection.methodexampleFHIRSpecimenCollectionMethod
http://hl7.org/fhir/ValueSet/specimen-collection-method
from the FHIR Standard
Specimen.collection.deviceexample
Specimen.collection.bodySiteexampleSNOMEDCTBodyStructures
http://hl7.org/fhir/ValueSet/body-site
from the FHIR Standard
Specimen.collection.fastingStatus[x]extensibleHl7VSRelevantClincialInformation
http://terminology.hl7.org/ValueSet/v2-0916
Specimen.processing.methodexampleSpecimenProcessingMethod
http://hl7.org/fhir/ValueSet/specimen-processing-method
from the FHIR Standard
Specimen.conditionextensibleHl7VSSpecimenCondition
http://terminology.hl7.org/ValueSet/v2-0493

Constraints

IdGradePath(s)DetailsRequirements
dom-2errorSpecimenIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorSpecimenIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorSpecimenIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6best practiceSpecimenA resource should have narrative for robust management
: text.`div`.exists()
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()

This structure is derived from Specimen

Summary

Mandatory: 17 elements(3 nested mandatory elements)
Must-Support: 16 elements

Structures

This structure refers to these other structures:

Extensions

This structure refers to these extensions:

Slices

This structure defines the following Slices:

  • The element 1 is sliced based on the value of Specimen.identifier
  • The element 1 is sliced based on the value of Specimen.type.coding

 

Other representations of profile: CSV, Excel, Schematron